| Runda | Tor | Data | Kierowca | Pojazd | Zespół |
|---|---|---|---|---|---|
| 1 |  Suzuka | 1999.03.19 | Dallara F399 - Toyota | Petronas Team TOM'S | |
| 2 | Tsukuba | 1999.04.18 | Dallara F399 - Toyota | Petronas Team TOM'S | |
| 3 | Fuji | 1999.05.02 | Dallara F399 - Toyota | Petronas Team TOM'S | |
| 4 | Mine | 1999.05.23 | Dallara F399 - Toyota | Petronas Team TOM'S | |
| 5 | Fuji | 1999.06.06 | Dallara F399 - Toyota | Petronas Team TOM'S | |
| 6 | Suzuka | 1999.07.04 | Dallara F399 - Toyota | Petronas Team TOM'S | |
| 7 | Sugo | 1999.08.01 | Dallara F399 - Toyota | Petronas Team TOM'S | |
| 8 | Aida | 1999.08.29 | Dallara F399 - Toyota | Team 5Zigen | |
| 9 | Motegi | 1999.10.03 | Dallara F399 - Mugen-Honda | Dome Project | |
| 10 | Suzuka | 1999.11.14 | Dallara F399 - Mugen-Honda | Dome Project |
