| Runda | Tor | Data | Kierowca | Pojazd | Zespół |
|---|---|---|---|---|---|
| 1 |  Fuji | 2006.04.01 | Dallara F305 - Toyota | Petronas Team TOM'S | |
| 2 | 2006.04.02 | Dallara F305 - Toyota | Petronas Team TOM'S | ||
| 3 | Suzuka | 2006.04.15 | Dallara F306 - Toyota | Inging Motorsport | |
| 4 | 2006.04.16 | Dome F107 - Mugen-Honda | Honda Toda Racing | ||
| 5 | Motegi | 2006.05.27 | Dallara F306 - Toyota | Inging Motorsport | |
| 6 | 2006.05.28 | Dallara F305 - Toyota | Petronas Team TOM'S | ||
| 7 | Aida | 2006.06.17 | Dallara F305 - Toyota | Petronas Team TOM'S | |
| 8 | 2006.06.18 | Dallara F305 - Toyota | Petronas Team TOM'S | ||
| 9 | Suzuka | 2006.07.08 | Dome F107 - Mugen-Honda | Honda Team M-TEC | |
| 10 | 2006.07.09 | Dome F107 - Mugen-Honda | Honda Toda Racing | ||
| 11 | Autopolis | 2006.08.05 | Dallara F305 - Toyota | Petronas Team TOM'S | |
| 12 | 2006.08.06 | Dallara F306 - Toyota | Inging Motorsport | ||
| 13 | Fuji | 2006.08.26 | Dallara F305 - Toyota | Petronas Team TOM'S | |
| 14 | 2006.08.27 | Dallara F305 - Toyota | Petronas Team TOM'S | ||
| 15 | Sugo | 2006.09.16 | Dallara F305 - Nissan | ThreeBond Racing | |
| 16 | 2006.09.17 | Dallara F305 - Nissan | ThreeBond Racing | ||
| 17 | Motegi | 2006.10.21 | Dallara F305 - Toyota | Now Motor Sports | |
| 18 | 2006.10.22 | Dallara F305 - Nissan | ThreeBond Racing |
