| Runda | Tor | Data | Kierowca | Pojazd | Zespół |
|---|---|---|---|---|---|
| 1 |  Jerez | 2006.03.26 | Ducati Desmo16 |  Ducati Marlboro Team | |
| 2 |  Losail Grand Prix Kataru | 2006.04.08 | Yamaha M1 |  Camel Yamaha Team | |
| 3 |  Istanbul | 2006.04.30 | Honda RC211V | Fortuna Honda | |
| 4 |  Shanghai | 2006.05.14 | Honda RC211V | Repsol Honda Team | |
| 5 |  Le Mans | 2006.05.21 | Honda RC211V | Fortuna Honda | |
| 6 | Mugello | 2006.06.04 | Yamaha M1 | Camel Yamaha Team | |
| 7 |  Catalunya | 2006.06.18 | Yamaha M1 | Camel Yamaha Team | |
| 8 |  Assen | 2006.06.24 | Honda RC211V | Repsol Honda Team | |
| 9 |  Donington Park | 2006.07.02 | Honda RC211V | Repsol Honda Team | |
| 10 |  Sachsenring | 2006.07.16 | Yamaha M1 | Camel Yamaha Team | |
| 11 |  Laguna Seca | 2006.07.23 | Honda RC211V | Repsol Honda Team | |
| 12 |  Brno | 2006.08.20 | Ducati Desmo16 | Ducati Marlboro Team | |
| 13 |  Sepang | 2006.09.10 | Yamaha M1 | Camel Yamaha Team | |
| 14 |  Phillip Island | 2006.09.17 | Honda RC211V | Fortuna Honda | |
| 15 | Motegi | 2006.09.24 | Ducati Desmo16 | Ducati Marlboro Team | |
| 16 |  Estoril | 2006.10.15 | Honda RC211V | Fortuna Honda | |
| 17 |  Valencia | 2006.10.29 | Ducati Desmo16 | Ducati Marlboro Team |