| Runda | Tor | Data | Kierowca | Pojazd | Zespół |
|---|---|---|---|---|---|
| 1 |  Sepang | 1999.04.18 | Honda NSR |  ELF AXO Honda Gresini | |
| 2 |  Motegi | 1999.04.25 | Yamaha YZR | Chesterfield Yamaha Tech 3 | |
| 3 |  Jerez | 1999.05.09 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 4 |  Paul Ricard | 1999.05.23 | Honda NSR | Shell Advance Honda Team | |
| 5 |  Mugello | 1999.06.06 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 6 |  Catalunya | 1999.06.20 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 7 |  Assen | 1999.06.26 | Honda NSR | ELF AXO Honda Gresini | |
| 8 |  Donington Park | 1999.07.04 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 9 |  Sachsenring | 1999.07.18 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 10 |  Brno | 1999.08.22 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 11 | Imola | 1999.09.05 | Honda NSR | ELF AXO Honda Gresini | |
| 12 |  Valencia | 1999.09.19 | Honda NSR | Shell Advance Honda Team | |
| 13 |  Phillip Island | 1999.10.03 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 14 |  Welkom | 1999.10.10 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 15 |  Jacarepaguá | 1999.10.24 | Aprilia RSW | Aprilia Grand Prix Racing | |
| 16 |  Buenos Aires | 1999.10.31 | Yamaha YZR | Chesterfield Yamaha Tech 3 |